recipe igdiscover

Analyze antibody repertoires and discover new V genes

Homepage:

https://igdiscover.se/

License:

MIT

Recipe:

/igdiscover/meta.yaml

Links:

biotools: igdiscover, doi: 10.1038/ncomms13642

package igdiscover

Versions:

0.15.1-1,  0.15.1-0,  0.14-0,  0.13-0,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.12.1-0,  0.12-0, 

0.15.1-1,  0.15.1-0,  0.14-0,  0.13-0,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.12.1-0,  0.12-0,  0.11-0,  0.10-3,  0.10-2,  0.10-1,  0.9-1,  0.9-0,  0.8.0-1,  0.8.0-0,  0.7.0-0,  0.6.0-1,  0.5-1,  0.4-1,  0.3-1

Depends:

• cutadapt >=3.5

• dnaio >=0.7.1

• flash 1.2.*

• igblast 1.17.*

• matplotlib-base >=3.1.0

• muscle 3.8.*

• numpy >=1.17.5

• pandas >=1.0

• pear 0.9.6.*

• python >=3.6

• ruamel.yaml 0.16.*

• scipy >=1.4.1

• seaborn-base >=0.11.*

• snakemake-minimal 5.9.*

• tinyalign >=0.2

• xopen >=1.2.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install igdiscover

and update with:

conda update igdiscover

or use the docker container:

docker pull quay.io/biocontainers/igdiscover:<tag>

(see igdiscover/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/igdiscover/README.html)