recipe igdiscover

Analyze antibody repertoires and discover new V genes

Homepage

https://igdiscover.se/

License

MIT

Recipe

/igdiscover/meta.yaml

Links

biotools: igdiscover, doi: 10.1038/ncomms13642

package igdiscover

(downloads) docker_igdiscover

Versions

0.11-0, 0.10-3, 0.10-2, 0.10-1, 0.9-1, 0.9-0, 0.8.0-1, 0.8.0-0, 0.7.0-0, 0.6.0-1, 0.5-1, 0.4-1, 0.3-1

Depends cutadapt

1.18

Depends flash

1.2.*

Depends igblast

1.7.*

Depends matplotlib-base

3.0.*

Depends muscle

3.8.*

Depends numpy

>=1.15

Depends pandas

0.23.*

Depends pear

0.9.6.*

Depends pip

Depends python

>=3.6,<3.7.0a0

Depends ruamel.yaml

0.15.*

Depends scipy

>=1.1

Depends seaborn

0.9.*

Depends snakemake-minimal

5.3.*

Depends sqt

0.8.*

Depends xopen

>=0.3.5

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install igdiscover

and update with:

conda update igdiscover

or use the docker container:

docker pull quay.io/biocontainers/igdiscover:<tag>

(see igdiscover/tags for valid values for <tag>)