recipe igdiscover

Analyze antibody repertoires and discover new V genes

Homepage:

https://igdiscover.se/

License:

MIT

Recipe:

/igdiscover/meta.yaml

Links:

biotools: igdiscover, doi: 10.1038/ncomms13642

package igdiscover

versions:

0.15.1-2,  0.15.1-1,  0.15.1-0,  0.14-0,  0.13-0,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.12.1-0, 

0.15.1-2,  0.15.1-1,  0.15.1-0,  0.14-0,  0.13-0,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.12.1-0,  0.12-0,  0.11-0,  0.10-3,  0.10-2,  0.10-1,  0.9-1,  0.9-0,  0.8.0-1,  0.8.0-0,  0.7.0-0,  0.6.0-1,  0.5-1,  0.4-1,  0.3-1

depends cutadapt:

>=3.5

depends dnaio:

>=0.7.1

depends flash:

1.2.*

depends igblast:

1.17.*

depends matplotlib-base:

>=3.1.0

depends muscle:

3.8.*

depends numpy:

>=1.17.5

depends pandas:

>=1.0

depends pear:

0.9.6.*

depends python:

>=3.6

depends ruamel.yaml:

0.16.*

depends scipy:

>=1.4.1

depends seaborn-base:

>=0.11.*

depends snakemake-minimal:

>=5.9

depends tinyalign:

>=0.2

depends xopen:

>=1.2.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install igdiscover

and update with::

   mamba update igdiscover

To create a new environment, run:

mamba create --name myenvname igdiscover

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/igdiscover:<tag>

(see `igdiscover/tags`_ for valid values for ``<tag>``)

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