recipe igfinder

A tool to extract Igh and Igl/Igk gene sequences from assembled transcripts

Homepage:

https://tx.bioreg.kyushu-u.ac.jp/igfinder

License:

MIT

Recipe:

/igfinder/meta.yaml

package igfinder

versions:

1.0-0

depends biopython:

depends numpy:

depends python:

2.7.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install igfinder

and update with::

   mamba update igfinder

To create a new environment, run:

mamba create --name myenvname igfinder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/igfinder:<tag>

(see `igfinder/tags`_ for valid values for ``<tag>``)

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Link to this page

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