recipe illumina-cleanup

Nextflow pipeline for pre-processing Illumina FASTQ files

Homepage

https://github.com/rpetit3/illumina-cleanup

License

MIT

Recipe

/illumina-cleanup/meta.yaml

package illumina-cleanup

Versions

1.0.0-1,  1.0.0-0

Depends

• bbmap

• fastq-scan

• fastqc

• lighter

• nextflow

• pigz

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install illumina-cleanup

and update with:

conda update illumina-cleanup

or use the docker container:

docker pull quay.io/biocontainers/illumina-cleanup:<tag>

(see illumina-cleanup/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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