recipe illumina-cleanup

Nextflow pipeline for pre-processing Illumina FASTQ files

Homepage

https://github.com/rpetit3/illumina-cleanup

License

MIT

Recipe

/illumina-cleanup/meta.yaml

package illumina-cleanup

Versions

1.0.0-0

Depends bbmap

Depends fastq-scan

Depends fastqc

Depends lighter

Depends nextflow

Depends pigz

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install illumina-cleanup

and update with:

conda update illumina-cleanup

or use the docker container:

docker pull quay.io/biocontainers/illumina-cleanup:<tag>

(see illumina-cleanup/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/illumina-cleanup/README.html)