recipe illumina-interop

The Illumina InterOp libraries are a set of common routines used for reading and writing InterOp metric files. These metric files are binary files produced during a run providing detailed statistics about a run. In a few cases, the metric files are produced after a run during secondary analysis (index metrics) or for faster display of a subset of the original data (collapsed quality scores).

Homepage:

http://illumina.github.io/interop/index.html

Developer docs:

https://github.com/Illumina/interop

License:

GPL / GPL-3.0-only

Recipe:

/illumina-interop/meta.yaml

package illumina-interop

(downloads) docker_illumina-interop

versions:
1.3.2-0,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.4-2,  1.2.4-0,  1.2.3-2,  1.2.3-1,  1.2.3-0, 

1.3.2-0,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.4-2,  1.2.4-0,  1.2.3-2,  1.2.3-1,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.28-0,  1.1.27-1,  1.1.27-0,  1.1.25-1,  1.1.25-0,  1.1.24-0,  1.1.23-1,  1.1.23-0,  1.1.22-0,  1.1.21-1,  1.1.21-0,  1.1.20-0,  1.1.19-0,  1.1.18-0,  1.1.16-0,  1.1.15-0,  1.1.14-0,  1.1.12-0,  1.1.11-0,  1.1.10-0,  1.1.9-0,  1.1.8-0,  1.1.7-0,  1.1.6-0,  1.1.4-3,  1.1.4-0,  1.0.25-1,  1.0.25-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install illumina-interop

and update with::

   mamba update illumina-interop

To create a new environment, run:

mamba create --name myenvname illumina-interop

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/illumina-interop:<tag>

(see `illumina-interop/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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