recipe illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).



GPL3 / GNU General Public v3 or later (GPLv3+)



package illumina-utils

(downloads) docker_illumina-utils



depends matplotlib-base:

depends numpy:

depends python:


depends python-levenshtein:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install illumina-utils

and update with::

   mamba update illumina-utils

To create a new environment, run:

mamba create --name myenvname illumina-utils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `illumina-utils/tags`_ for valid values for ``<tag>``)

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