recipe im2deep

Framework for prediction of collisional cross-section of peptides.

Homepage:

https://github.com/compomics/im2deep

License:

APACHE / Apache-2.0

Recipe:

/im2deep/meta.yaml

package im2deep

versions:

0.3.1-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.2-0

depends click:

depends deeplc:

depends deeplcretrainer:

depends numpy:

depends pandas:

depends psm-utils:

depends python:

>=3.8

depends tensorflow:

>=2.2,<2.13.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install im2deep

and update with::

   mamba update im2deep

To create a new environment, run:

mamba create --name myenvname im2deep

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/im2deep:<tag>

(see `im2deep/tags`_ for valid values for ``<tag>``)

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