recipe ima3

IMa3 can be used to solve a fundamental problem in evolutionary genetics, which is to jointly consider phylogenetic history and pouplation genetic history, including gene exchange. IMa3 can be used to estimate the rooted phylogenetic tree for multiple populations, and does so while integrating over all possible Isolation-with-Migration models

Homepage:

https://github.com/jodyhey/IMa3

License:

GPL (>= 3)

Recipe:

/ima3/meta.yaml

package ima3

(downloads) docker_ima3

versions:

1.13-1,  1.13-0,  1.12-3,  1.12-2,  1.12-1,  1.12-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends openmpi:

>=1.8

depends openmpi:

>=4.1.5,<5.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ima3

and update with::

   mamba update ima3

To create a new environment, run:

mamba create --name myenvname ima3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ima3:<tag>

(see `ima3/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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