recipe imctools

An Image Mass Cytometry (IMC) file conversion tool that aims to convert IMC rawfiles (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler tiff files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc

Homepage

https://github.com/BodenmillerGroup/imctools

Documentation

https://github.com/BodenmillerGroup/imctools/blob/master/README.md

License

MIT

Recipe

/imctools/meta.yaml

package imctools

(downloads) docker_imctools

Versions

1.0.7-01.0.6-01.0.5-01.0.4-01.0.3-01.0.1-00.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install imctools

and update with:

conda update imctools

or use the docker container:

docker pull quay.io/biocontainers/imctools:<tag>

(see imctools/tags for valid values for <tag>)