recipe imctools

An Image Mass Cytometry (IMC) file conversion tool that aims to convert IMC rawfiles (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler tiff files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc

Homepage:

https://github.com/BodenmillerGroup/imctools

Documentation:

https://github.com/BodenmillerGroup/imctools/blob/master/README.md

License:

MIT

Recipe:

/imctools/meta.yaml

package imctools

(downloads) docker_imctools

Versions:

1.0.8-01.0.7-01.0.6-01.0.5-01.0.4-01.0.3-01.0.1-00.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install imctools

and update with:

conda update imctools

or use the docker container:

docker pull quay.io/biocontainers/imctools:<tag>

(see imctools/tags for valid values for <tag>)

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