recipe infernal

Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.

Homepage:

http://eddylab.org/infernal

Documentation:

http://eddylab.org/infernal/Userguide.pdf

Developer docs:

https://github.com/EddyRivasLab/infernal

License:

BSD / BSD-3-Clause

Recipe:

/infernal/meta.yaml

Links:

doi: 10.1093/bioinformatics/btt509, biotools: infernal

Infernal (INFERence of RNA ALignment) is for searching DNA sequence databases for RNA structure and sequence similarities.

package infernal

(downloads) docker_infernal

versions:
1.1.5-3,  1.1.5-2,  1.1.5-1,  1.1.5-0,  1.1.4-4,  1.1.4-3,  1.1.4-2,  1.1.4-1,  1.1.4-0, 

1.1.5-3,  1.1.5-2,  1.1.5-1,  1.1.5-0,  1.1.4-4,  1.1.4-3,  1.1.4-2,  1.1.4-1,  1.1.4-0,  1.1.3-1,  1.1.3-0,  1.1.2-3,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.2-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=12

depends libgomp:

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install infernal

and update with::

   mamba update infernal

To create a new environment, run:

mamba create --name myenvname infernal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/infernal:<tag>

(see `infernal/tags`_ for valid values for ``<tag>``)

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