recipe influx_si

Metabolic flux and concentration estimation based on stable isotope labeling

Homepage:

https://github.com/sgsokol/influx/

Documentation:

https://influx-si.readthedocs.io/

License:

GPL2 / GPL-2.0-or-later

Recipe:

/influx_si/meta.yaml

To install this package from bioconda run: `conda install -c conda-forge -c bioconda influx_si`

package influx_si

versions:

7.1.0-0,  7.0.4-0,  7.0.3-0,  7.0.2-0,  7.0.1-0,  7.0-0,  6.1-0,  6.0.4-1,  6.0.4-0, 

7.1.0-0,  7.0.4-0,  7.0.3-0,  7.0.2-0,  7.0.1-0,  7.0-0,  6.1-0,  6.0.4-1,  6.0.4-0,  6.0.1-0,  6.0-0,  5.4.0-0,  5.3.0-0,  5.2.0-0,  5.1.0-1,  5.1.0-0,  5.0.3-0,  5.0.2-0,  5.0.1-1,  5.0.1-0,  5.0-0

depends kvh:

depends packaging:

depends pandas:

depends python:

>=3.5

depends python-libsbml:

depends r-arrapply:

depends r-base:

depends r-bitops:

depends r-kvh:

depends r-limsolve:

depends r-multbxxc:

depends r-nlsic:

depends r-rcpp:

>=1.0.0

depends r-rcpparmadillo:

depends r-rmumps:

>=5.2.1_12

depends r-slam:

depends scipy:

depends setuptools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install influx_si

and update with::

   mamba update influx_si

To create a new environment, run:

mamba create --name myenvname influx_si

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/influx_si:<tag>

(see `influx_si/tags`_ for valid values for ``<tag>``)

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