recipe insilicosv

Simulator for complex structural variants

Homepage:

https://github.com/PopicLab/insilicoSV

License:

MIT / MIT

Recipe:

/insilicosv/meta.yaml

package insilicosv

versions:

0.0.6-0,  0.0.5-0,  0.0.4-0

depends cycler:

depends kiwisolver:

depends matplotlib-base:

depends numpy:

depends pillow:

depends pyparsing:

depends pysam:

depends python:

>=3.8

depends python-dateutil:

depends pyyaml:

depends six:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install insilicosv

and update with::

   mamba update insilicosv

To create a new environment, run:

mamba create --name myenvname insilicosv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/insilicosv:<tag>

(see `insilicosv/tags`_ for valid values for ``<tag>``)

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Link to this page

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