recipe instrain

Calculation of strain-level metrics

Homepage:

https://github.com/MrOlm/inStrain

License:

MIT / MIT

Recipe:

/instrain/meta.yaml

package instrain

Versions:

1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.7-0,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0, 

1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.7-0,  1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.1-0,  1.4.0-0,  1.3.11-0,  1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.1-1,  1.3.1-0,  1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.4-0,  1.2.3-0,  1.2.2-0

Depends:

• biopython <=1.74

• drep

• h5py

• lmfit

• matplotlib-base

• networkx

• numba

• numpy

• pandas >=0.25,!=1.1.3

• psutil

• pysam >=0.15

• pytest

• python >=3.4

• samtools

• scikit-learn

• seaborn

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install instrain

and update with:

conda update instrain

or use the docker container:

docker pull quay.io/biocontainers/instrain:<tag>

(see instrain/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/instrain/README.html)