recipe instrain

Calculation of strain-level metrics

Homepage

https://github.com/MrOlm/inStrain

License

MIT / MIT

Recipe

/instrain/meta.yaml

package instrain

Versions

1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.4-0,  1.2.3-0, 

1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.4-0,  1.2.3-0,  1.2.2-0

Depends

• biopython

• drep

• h5py

• matplotlib-base

• networkx

• numpy

• pandas >=0.25

• psutil

• pysam

• pytest

• python >=3.4

• scikit-learn

• seaborn

• tqdm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install instrain

and update with:

conda update instrain

or use the docker container:

docker pull quay.io/biocontainers/instrain:<tag>

(see instrain/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/instrain/README.html)