recipe intemap

Integrated metagenomic assembly pipeline for short reads

Homepage

http://cqb.pku.edu.cn/ZhuLab/InteMAP/index.html

License

Recipe

/intemap/meta.yaml

package intemap

(downloads) docker_intemap

Versions

1.0-1, 1.0-0

Depends abyss

Depends bowtie2

Depends idba

Depends jellyfish

Depends libgcc

Depends mummer

Depends python

2.7*

Depends quake

Depends wgs-assembler

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install intemap

and update with:

conda update intemap

or use the docker container:

docker pull quay.io/biocontainers/intemap:<tag>

(see intemap/tags for valid values for <tag>)