recipe intemap

Integrated metagenomic assembly pipeline for short reads

Homepage:

http://cqb.pku.edu.cn/ZhuLab/InteMAP/index.html

License:

Recipe:

/intemap/meta.yaml

package intemap

versions:

1.0-1,  1.0-0

depends abyss:

depends bowtie2:

depends idba:

depends jellyfish:

depends libgcc:

depends mummer:

depends python:

2.7*

depends quake:

depends wgs-assembler:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install intemap

and update with::

   mamba update intemap

To create a new environment, run:

mamba create --name myenvname intemap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/intemap:<tag>

(see `intemap/tags`_ for valid values for ``<tag>``)

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