recipe intemap

Integrated metagenomic assembly pipeline for short reads

Homepage

http://cqb.pku.edu.cn/ZhuLab/InteMAP/index.html

License

Recipe

/intemap/meta.yaml

package intemap

Versions

1.0-1,  1.0-0

Depends

• abyss

• bowtie2

• idba

• jellyfish

• libgcc

• mummer

• python 2.7*

• quake

• wgs-assembler

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install intemap

and update with:

conda update intemap

or use the docker container:

docker pull quay.io/biocontainers/intemap:<tag>

(see intemap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/intemap/README.html)