recipe interproscan

InterPro integrates together predictive information about proteins function from a number of partner resources

Homepage:

https://github.com/ebi-pf-team/interproscan

License:

Apache / GPLv3

Recipe:

/interproscan/meta.yaml

Links:

biotools: interproscan_ebi

package interproscan

versions:

5.59_91.0-1,  5.59_91.0-0,  5.55_88.0-1,  5.55_88.0-0,  5.54_87.0-3,  5.54_87.0-2,  5.54_87.0-1,  5.54_87.0-0,  5.52_86.0-0

depends blast:

>=2.12

depends cath-tools:

depends emboss:

depends hmmer:

>=3

depends hmmer2:

depends libgcc-ng:

>=12

depends openjdk:

>=11,<17

depends perl:

>=5.08

depends pftools:

depends python:

>=3

depends sfld:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install interproscan

and update with::

   mamba update interproscan

To create a new environment, run:

mamba create --name myenvname interproscan

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/interproscan:<tag>

(see `interproscan/tags`_ for valid values for ``<tag>``)

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