recipe intervaltree_bio

Interval tree convenience classes for genomic data

Homepage:

https://github.com/konstantint/intervaltree-bio

License:

MIT License

Recipe:

/intervaltree_bio/meta.yaml

package intervaltree_bio

(downloads) docker_intervaltree_bio

versions:

1.0.1-2,  1.0.1-1,  1.0.1-0

depends intervaltree:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install intervaltree_bio

and update with::

   mamba update intervaltree_bio

To create a new environment, run:

mamba create --name myenvname intervaltree_bio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/intervaltree_bio:<tag>

(see `intervaltree_bio/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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