recipe intervene

A tool for intersection of multiple gene or genomic region sets and visualization as venn diagrams, UpSet plots or pariwaise heatmaps

Homepage:

https://github.com/asntech/intervene

License:

MIT / MIT License

Recipe:

/intervene/meta.yaml

Links:

biotools: Intervene, doi: 10.1186/s12859-017-1708-7

package intervene

versions:

0.6.5-1,  0.6.5-0,  0.6.4-5,  0.6.4-4,  0.6.4-3,  0.6.4-2,  0.6.4-1,  0.6.4-0,  0.6.2-0, 

0.6.5-1,  0.6.5-0,  0.6.4-5,  0.6.4-4,  0.6.4-3,  0.6.4-2,  0.6.4-1,  0.6.4-0,  0.6.2-0,  0.5.9-0,  0.5.8-0

depends bedtools:

>=2.29.1

depends matplotlib-base:

<3.4

depends numpy:

depends pandas:

>=1.0.0

depends pybedtools:

depends pysam:

>=0.15

depends python:

depends r-base:

depends r-cairo:

depends r-corrplot:

depends r-upsetr:

>=1.4.0

depends scipy:

depends seaborn:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install intervene

and update with::

   mamba update intervene

To create a new environment, run:

mamba create --name myenvname intervene

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/intervene:<tag>

(see `intervene/tags`_ for valid values for ``<tag>``)

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