recipe intervene

A tool for intersection of multiple gene or genomic region sets and visualization as venn diagrams, UpSet plots or pariwaise heatmaps

Homepage:

https://github.com/asntech/intervene

License:

MIT / MIT License

Recipe:

/intervene/meta.yaml

Links:

biotools: Intervene, doi: 10.1186/s12859-017-1708-7

package intervene

Versions:

0.6.5-1,  0.6.5-0,  0.6.4-5,  0.6.4-4,  0.6.4-3,  0.6.4-2,  0.6.4-1,  0.6.4-0,  0.6.2-0, 

0.6.5-1,  0.6.5-0,  0.6.4-5,  0.6.4-4,  0.6.4-3,  0.6.4-2,  0.6.4-1,  0.6.4-0,  0.6.2-0,  0.5.9-0,  0.5.8-0

Depends:

• bedtools >=2.29.1

• matplotlib-base <3.4

• numpy

• pandas >=1.0.0

• pybedtools

• pysam >=0.15

• python

• r-base

• r-cairo

• r-corrplot

• r-upsetr >=1.4.0

• scipy

• seaborn

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install intervene

and update with:

conda update intervene

or use the docker container:

docker pull quay.io/biocontainers/intervene:<tag>

(see intervene/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/intervene/README.html)