recipe iphop

Predict host genus from genomes of uncultivated phages.

Homepage:

https://bitbucket.org/srouxjgi/iphop/

License:

GPL / Modified GPL v3

Recipe:

/iphop/meta.yaml

package iphop

Versions:

1.2.0-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-0

Depends:

• biopython 1.79.*

• blast 2.12.0.*

• click 8.0.1.*

• crisper_recognition_tool 1.2.*

• diamond 2.0.11.*

• hmmer 3.3.2.*

• joblib 1.0.1.*

• libstdcxx-ng 11.2.0.*

• pandas 1.3.2.*

• perl <6

• perl-bioperl <=1.7

• piler-cr 1.06.*

• prodigal 2.6.3.*

• python 3.8.*

• r-ranger 0.13.1.*

• scikit-learn 0.22.*

• tensorflow 2.7.0.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install iphop

and update with:

conda update iphop

or use the docker container:

docker pull quay.io/biocontainers/iphop:<tag>

(see iphop/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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