recipe iphop

Predict host genus from genomes of uncultivated phages.

Homepage:

https://bitbucket.org/srouxjgi/iphop/

License:

GPL3 / Modified GPL v3

Recipe:

/iphop/meta.yaml

Links:

doi: 10.1371/journal.pbio.3002083

package iphop

(downloads) docker_iphop

versions:

1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.0-0

depends biopython:

1.79.*

depends blast:

2.12.*

depends click:

8.0.*

depends crisper_recognition_tool:

1.2.*

depends diamond:

2.0.*

depends hmmer:

3.3.2.*

depends joblib:

1.0.*

depends numpy:

1.23.*

depends pandas:

1.3.*

depends perl:

<6

depends perl-bioperl:

depends piler-cr:

1.06.*

depends prodigal:

2.6.*

depends python:

3.8.*

depends r-base:

4.0.*

depends r-ranger:

0.13.*

depends scikit-learn:

0.22.*

depends tensorflow:

2.7.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install iphop

and update with::

   mamba update iphop

To create a new environment, run:

mamba create --name myenvname iphop

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/iphop:<tag>

(see `iphop/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/iphop/README.html)