recipe ipk

IPK is a tool for computing phylo-k-mers for a fixed phylogeny.

Homepage:

https://github.com/phylo42/ipk

License:

MIT / MIT

Recipe:

/ipk/meta.yaml

IPK is a tool for computing phylo-k-mers for a fixed phylogeny. Please cite: doi.org/10.1093/bioinformatics/btad692

package ipk

versions:

0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0,  0.5.0-0

depends boost-cpp:

1.85.*

depends click:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends phyml:

depends python:

depends raxml-ng:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ipk

and update with::

   mamba update ipk

To create a new environment, run:

mamba create --name myenvname ipk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ipk:<tag>

(see `ipk/tags`_ for valid values for ``<tag>``)

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