recipe irescue

A tool to quantify transposable elements expression in scRNA-seq.

Homepage:

https://github.com/bodegalab/irescue

License:

MIT

Recipe:

/irescue/meta.yaml

package irescue

Versions:

1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0

Depends:

• bedtools >=2.30.0

• coreutils >=9.3

• gawk >=5.0.1

• gzip >=1.12

• numpy >=1.20.2

• pysam >=0.16.0.1

• python >=3.7

• requests >=2.27.1

• samtools >=1.12

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install irescue

and update with:

conda update irescue

or use the docker container:

docker pull quay.io/biocontainers/irescue:<tag>

(see irescue/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/irescue/README.html)