recipe irf

Inverted Repeats Finder is a program that detects approximate inverted repeats.

Homepage:

https://github.com/Benson-Genomics-Lab/IRF

License:

GNU Affero General Public License, Version 3.0

Recipe:

/irf/meta.yaml

package irf

(downloads) docker_irf

versions:

3.08-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install irf

and update with::

   mamba update irf

To create a new environment, run:

mamba create --name myenvname irf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/irf:<tag>

(see `irf/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/irf/README.html)