recipe irida-linker

The NGS Archive Linker is a Perl script used to generate a structure of links for files stored in the IRIDA platform.



Apache / Apache-2.0



package irida-linker

(downloads) docker_irida-linker



depends perl:


depends perl-config-simple:

depends perl-file-path:

depends perl-getopt-long:

depends perl-http-message:

depends perl-json:

depends perl-libwww-perl:

depends perl-lwp-protocol-https:

depends perl-lwp-simple:

depends perl-termreadkey:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install irida-linker

and update with::

   mamba update irida-linker

To create a new environment, run:

mamba create --name myenvname irida-linker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `irida-linker/tags`_ for valid values for ``<tag>``)

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