recipe irida-staramr-results

IRIDA StarAMR Results program enables StarAMR analysis results that were run through IRIDA to be batch downloaded into a collection of spreadsheets using the command line.

Homepage:

https://github.com/phac-nml/irida-staramr-results

License:

Apache-2.0

Recipe:

/irida-staramr-results/meta.yaml

package irida-staramr-results

versions:

0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.2-0

depends pandas:

depends python:

>=3.8.*

depends python-dateutil:

depends pyyaml:

depends rauth:

depends requests:

depends setuptools:

depends xlsxwriter:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install irida-staramr-results

and update with::

   mamba update irida-staramr-results

To create a new environment, run:

mamba create --name myenvname irida-staramr-results

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/irida-staramr-results:<tag>

(see `irida-staramr-results/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/irida-staramr-results/README.html)