recipe irida-uploader

Upload NGS data to IRIDA system

Homepage:

https://github.com/phac-nml/irida-uploader

Documentation:

https://irida-uploader.readthedocs.io/en/latest

License:

APACHE / Apache-2.0

Recipe:

/irida-uploader/meta.yaml

package irida-uploader

versions:

0.9.2-0,  0.9.0-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.2-1, 

0.9.2-0,  0.9.0-0,  0.8.3-0,  0.8.2-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.2-1,  0.6.2-0,  0.6.1-0,  0.6.0-1,  0.6.0-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.1-0,  0.1-0

depends appdirs:

>=1.4.3

depends cerberus:

depends python:

>=3.7

depends rauth:

>=0.7.3

depends requests:

>=2.21.0

depends requests-toolbelt:

>=0.9.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install irida-uploader

and update with::

   mamba update irida-uploader

To create a new environment, run:

mamba create --name myenvname irida-uploader

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/irida-uploader:<tag>

(see `irida-uploader/tags`_ for valid values for ``<tag>``)

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