recipe irma

IRMA: Iterative Refinement Meta-Assembler for the robust assembly, variant calling, and phasing of highly variable RNA viruses.

Homepage:

https://wonder.cdc.gov/amd/flu/irma/

License:

GNU General Public License v3 or later (GPLv3+)

Recipe:

/irma/meta.yaml

package irma

Versions:

1.0.3-0,  1.0.2-2,  1.0.2-1,  1.0.2-0

Depends:

• blat >=35

• fasttree >=2.1.3

• minimap2 >=2.17

• muscle >=3.8.1551

• parallel >=20181022

• perl >=5.32.1,<6.0a0 *_perl5

• pigz >=2.3.4

• r-base >=3.5.1

• samtools >=1.2

• zip >=3.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install irma

and update with:

conda update irma

or use the docker container:

docker pull quay.io/biocontainers/irma:<tag>

(see irma/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/irma/README.html)