recipe isaac4

Ultra-fast whole-genome alignment for Illumina sequencing platforms.

Homepage:

https://github.com/Illumina/Isaac4

License:

GPL-3.0-only

Recipe:

/isaac4/meta.yaml

Links:

biotools: isaac, doi: 10.1093/bioinformatics/btt314

package isaac4

versions:

04.18.11.09-0

depends gnuplot:

>=4.0

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends libxml2:

>=2.9.10,<2.10.0a0

depends libxslt:

>=1.1.31

depends libxslt:

>=1.1.33,<2.0a0

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isaac4

and update with::

   mamba update isaac4

To create a new environment, run:

mamba create --name myenvname isaac4

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isaac4:<tag>

(see `isaac4/tags`_ for valid values for ``<tag>``)

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