recipe isatools

Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments

Homepage:

https://isa-tools.org/

Developer docs:

https://github.com/ISA-tools/isa-api

License:

MPL-2.0

Recipe:

/isatools/meta.yaml

Links:

doi: 10.1093/gigascience/giab060

package isatools

versions:

0.14.2-0,  0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.0-0,  0.10.3-1,  0.10.3-0,  0.10.2-0,  0.10.0-1, 

0.14.2-0,  0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.0-0,  0.10.3-1,  0.10.3-0,  0.10.2-0,  0.10.0-1,  0.10.0-0,  0.9.5-0,  0.9.4-0,  0.9.3-0

depends beautifulsoup4:

depends behave:

1.2.6

depends biopython:

depends bokeh:

depends certifi:

2021.5.30

depends chardet:

depends coveralls:

depends ddt:

>=1.4.2

depends deepdiff:

depends flake8:

3.9.2

depends flask:

depends flask-sqlalchemy:

depends graphene:

3.1.1

depends graphql-core:

3.2.3

depends httpretty:

1.1.3

depends iso8601:

depends jinja2:

depends jsonschema:

depends lxml:

depends mzml2isa:

depends networkx:

depends numpy:

depends openpyxl:

depends pandas:

1.5.0

depends progressbar2:

depends python:

>=3.6

depends pyyaml:

depends rdflib:

depends requests:

depends sure:

2.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isatools

and update with::

   mamba update isatools

To create a new environment, run:

mamba create --name myenvname isatools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isatools:<tag>

(see `isatools/tags`_ for valid values for ``<tag>``)

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