recipe isescan

A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome

Homepage:

https://github.com/xiezhq/ISEScan

License:

GNU General Public License

Recipe:

/isescan/meta.yaml

package isescan

Versions:

1.7.2.3-1,  1.7.2.3-0,  1.7.2.2.2-0,  1.7.2.2.1-0,  1.7.2.1-0,  1.7.2-0,  1.7.1-1,  1.7.1-0

Depends:

• biopython >=1.62

• blast >=2.2.31

• fastcluster

• fraggenescan <=1.30

• hmmer >=3.1b2

• libgcc-ng >=12

• numpy >=1.8

• python >=3

• scipy >=0.13.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install isescan

and update with:

conda update isescan

or use the docker container:

docker pull quay.io/biocontainers/isescan:<tag>

(see isescan/tags for valid values for <tag>)

Download stats

Link to this page

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