recipe isescan

A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome

Homepage:

https://github.com/xiezhq/ISEScan

License:

GNU General Public License

Recipe:

/isescan/meta.yaml

package isescan

versions:

1.7.2.3-3,  1.7.2.3-2,  1.7.2.3-1,  1.7.2.3-0,  1.7.2.2.2-0,  1.7.2.2.1-0,  1.7.2.1-0,  1.7.2-0,  1.7.1-1, 

1.7.2.3-3,  1.7.2.3-2,  1.7.2.3-1,  1.7.2.3-0,  1.7.2.2.2-0,  1.7.2.2.1-0,  1.7.2.1-0,  1.7.2-0,  1.7.1-1,  1.7.1-0

depends biopython:

>=1.62

depends blast:

>=2.2.31

depends fastcluster:

depends fraggenescan:

<=1.30

depends hmmer:

>=3.1b2

depends libgcc:

>=13

depends numpy:

>=1.8

depends python:

>=3

depends scipy:

>=0.13.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isescan

and update with::

   mamba update isescan

To create a new environment, run:

mamba create --name myenvname isescan

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isescan:<tag>

(see `isescan/tags`_ for valid values for ``<tag>``)

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