Package Recipe 'ismapper'

recipe ismapper

A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.

Homepage:: https://github.com/jhawkey/IS_mapper/
License:: BSD
Recipe:: /ismapper/meta.yaml
Links:: doi: 10.1186/s12864-015-1860-2

package ismapper¶

Versions:

2.0.2-1, 2.0.2-0, 2.0.1-2, 2.0.1-1, 2.0.1-0, 2.0-1

Depends:

bedtools >=2.20
biopython >=1.63
blast >=2.2.28
bwa >=0.7.5a
python >=3.6
samtools >=0.1.19

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ismapper

and update with:

conda update ismapper

or use the docker container:

docker pull quay.io/biocontainers/ismapper:<tag>

(see ismapper/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ismapper/README.html)