recipe isocor

A Isotope Correction for mass spectrometry labeling experiments

Homepage:

https://github.com/MetaSys-LISBP/IsoCor/

Documentation:

https://isocor.readthedocs.io/

License:

GPL3 / GPL-3.0-or-later

Recipe:

/isocor/meta.yaml

Links:

doi: 10.1093/bioinformatics/btz209

package isocor

(downloads) docker_isocor

versions:

2.2.2-0,  2.2.1-0,  2.2.0-0,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.1.0-1,  2.1.0-0

depends numpy:

>=1.15

depends pandas:

>=0.17.1

depends python:

>=3.7

depends scipy:

>=0.12.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install isocor

and update with::

   mamba update isocor

To create a new environment, run:

mamba create --name myenvname isocor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/isocor:<tag>

(see `isocor/tags`_ for valid values for ``<tag>``)

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