recipe itero

A pipeline for iterative, guided contig assembly that integrates spades, bwa, and samtools to produce assembled contigs.

Homepage:

https://github.com/faircloth-lab/itero

License:

BSD

Recipe:

/itero/meta.yaml

package itero

Versions:

1.1.2-1,  1.1.2-0,  1.1.1-2,  1.1.1-0,  1.1.0-0,  1.0.1-0,  1.0.0-0

Depends:

• argcomplete

• bedtools

• biopython

• bwa

• gawk

• grep

• mpi4py

• nomkl

• numpy

• python <3

• samtools

• schwimmbad

• six

• spades 3.12.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install itero

and update with:

conda update itero

or use the docker container:

docker pull quay.io/biocontainers/itero:<tag>

(see itero/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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