recipe itero

A pipeline for iterative, guided contig assembly that integrates spades, bwa, and samtools to produce assembled contigs.

Homepage

https://github.com/faircloth-lab/itero

License

BSD

Recipe

/itero/meta.yaml

package itero

(downloads) docker_itero

Versions

1.1.2-0, 1.1.1-2, 1.1.1-0, 1.1.0-0, 1.0.1-0, 1.0.0-0

Depends argcomplete

Depends bedtools

Depends biopython

Depends bwa

Depends gawk

Depends grep

Depends mpi4py

Depends nomkl

Depends numpy

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends schwimmbad

Depends six

Depends spades

3.12.*

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install itero

and update with:

conda update itero

or use the docker container:

docker pull quay.io/biocontainers/itero:<tag>

(see itero/tags for valid values for <tag>)