recipe iva

Iterative Virus Assembler

Homepage

https://github.com/sanger-pathogens/iva

License

GPL / GPLv3

Recipe

/iva/meta.yaml

package iva

(downloads) docker_iva

Versions

1.0.9-1, 1.0.9-0, 1.0.7-0, 1.0.6-0

Depends kmc

Depends mummer

Depends networkx

>=1.7

Depends pyfastaq

>=3.10.0

Depends pysam

>=0.8.1

Depends python

>=3.5,<3.6.0a0

Depends samtools

Depends smalt

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install iva

and update with:

conda update iva

or use the docker container:

docker pull quay.io/biocontainers/iva:<tag>

(see iva/tags for valid values for <tag>)