recipe ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Homepage:

https://andersen-lab.github.io/ivar/html/

Developer docs:

https://github.com/andersen-lab/ivar

License:

GPL-3.0

Recipe:

/ivar/meta.yaml

Links:

biotools: ivar, usegalaxy-eu: ivar_variants

package ivar

versions:

1.4.3-0,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.1-0,  1.4-1,  1.4-0,  1.3.2-1, 

1.4.3-0,  1.4.2-3,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.4.1-0,  1.4-1,  1.4-0,  1.3.2-1,  1.3.2-0,  1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3-1,  1.3-0,  1.2.3-0,  1.2.2-1,  1.2.2-0,  1.2.1-0,  1.2-0,  1.1_beta-0,  1.0.1-0,  1.0-2,  1.0-1,  1.0-0

depends htslib:

>=1.20,<1.22.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ivar

and update with::

   mamba update ivar

To create a new environment, run:

mamba create --name myenvname ivar

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ivar:<tag>

(see `ivar/tags`_ for valid values for ``<tag>``)

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