jali

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Alignment method for comparing a protein sequence to a protein family, represented by a multiple alignment. It can also be used for sensitive protein database searches. The algorithm is a generalization of the Smith-Waterman algorithm.

Home http://bibiserv.cebitec.uni-bielefeld.de/jali
Versions 1.3
License file
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/jali
Links biotools: jali, doi: 10.1089/106652702761034172

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install jali

and update with:

conda update jali

docker

A Docker container is available at https://quay.io/repository/biocontainers/jali.