recipe jbrowse

The JBrowse Genome Browser

Homepage:

https://jbrowse.org/

License:

LGPL

Recipe:

/jbrowse/meta.yaml

Links:

biotools: jbrowse, doi: 10.1101/gr.094607.109

package jbrowse

(downloads) docker_jbrowse

versions:
1.16.11-6,  1.16.11-5,  1.16.11-4,  1.16.11-3,  1.16.11-2,  1.16.11-1,  1.16.11-0,  1.16.10-0,  1.16.9-0, 

1.16.11-6,  1.16.11-5,  1.16.11-4,  1.16.11-3,  1.16.11-2,  1.16.11-1,  1.16.11-0,  1.16.10-0,  1.16.9-0,  1.16.8-0,  1.16.6-1,  1.16.6-0,  1.16.5-0,  1.16.4-0,  1.16.2-7,  1.16.2-6,  1.16.2-5,  1.16.2-4,  1.16.1-4,  1.16.1-3,  1.16.1-2,  1.16.1-1,  1.16.1-0,  1.15.4-0,  1.15.1-0,  1.15.0-0,  1.12.5-2,  1.12.5-0,  1.12.3-0,  1.12.1-3,  1.12.1-2,  1.12.1-1,  1.12.1-0

depends gff3sort:

depends libcxx:

>=15.0.7

depends nodejs:

>=15.14.0,<16.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-bio-featureio:

depends perl-bio-gff3:

depends perl-bioperl:

depends perl-capture-tiny:

depends perl-db-file:

depends perl-devel-size:

depends perl-digest-crc32:

depends perl-exporter-tiny:

depends perl-file-copy-recursive:

depends perl-file-next:

depends perl-hash-merge:

depends perl-heap-simple:

depends perl-io-uncompress-gunzip:

depends perl-json:

depends perl-list-moreutils:

depends perl-local-lib:

depends perl-perlio-gzip:

depends perl-scalar-list-utils:

depends perl-test-deep:

depends perl-test-simple:

depends perl-test-warn:

depends perl-uri:

5.17.*

depends python_abi:

2.7.* *_cp27m

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jbrowse

and update with::

   mamba update jbrowse

To create a new environment, run:

mamba create --name myenvname jbrowse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jbrowse:<tag>

(see `jbrowse/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jbrowse/README.html)