recipe jbrowse

The JBrowse Genome Browser

Homepage

https://jbrowse.org/

License

LGPL

Recipe

/jbrowse/meta.yaml

Links

biotools: jbrowse, doi: 10.1101/gr.094607.109

package jbrowse

(downloads) docker_jbrowse

Versions

1.16.5-0, 1.16.4-0, 1.16.2-7, 1.16.2-6, 1.16.2-5, 1.16.2-4, 1.16.1-4, 1.16.1-3, 1.16.1-2, 1.16.1-1, 1.16.1-0, 1.15.4-0, 1.15.1-0, 1.15.0-0, 1.12.5-2, 1.12.5-0, 1.12.3-0, 1.12.1-3, 1.12.1-2, 1.12.1-1, 1.12.1-0

Depends gff3sort

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-bio-featureio

Depends perl-bio-gff3

Depends perl-bioperl

Depends perl-capture-tiny

Depends perl-db-file

Depends perl-devel-size

Depends perl-digest-crc32

Depends perl-exporter-tiny

Depends perl-file-copy-recursive

Depends perl-file-next

Depends perl-hash-merge

Depends perl-heap-simple

Depends perl-io-uncompress-gunzip

Depends perl-json

Depends perl-list-moreutils

Depends perl-local-lib

Depends perl-perlio-gzip

Depends perl-scalar-list-utils

Depends perl-test-deep

Depends perl-test-simple

Depends perl-test-warn

Depends perl-uri

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install jbrowse

and update with:

conda update jbrowse

or use the docker container:

docker pull quay.io/biocontainers/jbrowse:<tag>

(see jbrowse/tags for valid values for <tag>)