recipe jbrowse2

The JBrowse 2 Genome Browser

Homepage:

https://jbrowse.org/

License:

Apache / Apache-2.0

Recipe:

/jbrowse2/meta.yaml

Links:

biotools: jbrowse, doi: 10.1101/gr.094607.109

package jbrowse2

(downloads) docker_jbrowse2

versions:
2.11.0-0,  2.10.3-0,  2.10.2-0,  2.10.1-0,  2.10.0-0,  2.9.0-0,  2.8.0-0,  2.7.2-0,  2.7.1-0, 

2.11.0-0,  2.10.3-0,  2.10.2-0,  2.10.1-0,  2.10.0-0,  2.9.0-0,  2.8.0-0,  2.7.2-0,  2.7.1-0,  2.7.0-0,  2.6.3-0,  2.6.2-0,  2.6.1-0,  2.5.0-1,  2.5.0-0,  2.4.2-0,  2.4.1-0,  2.4.0-0,  2.3.4-0,  2.3.3-0,  2.3.2-0,  2.3.1-0,  2.2.2-0,  2.2.1-0,  2.2.0-0,  2.1.6-0,  2.1.5-0,  2.1.4-0,  2.1.2-0,  2.1.0-0,  2.0.1-0,  2.0.0-0,  1.7.11-0,  1.7.10-0,  1.7.9-0,  1.7.8-0,  1.7.7-0,  1.7.6-0,  1.7.4-0,  1.7.3-0,  1.6.9-0,  1.6.7-0,  1.6.6-0,  1.6.5-0,  1.6.4-1,  1.6.4-0,  1.5.9-1,  1.5.9-0,  1.5.8-0,  1.5.5-0,  1.5.3-0,  1.5.1-0,  1.5.0-0,  1.4.4-0,  1.4.1-0,  1.3.5-0,  1.3.3-0,  1.3.2-0

depends bcftools:

depends gff3sort:

depends htslib:

depends nodejs:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jbrowse2

and update with::

   mamba update jbrowse2

To create a new environment, run:

mamba create --name myenvname jbrowse2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jbrowse2:<tag>

(see `jbrowse2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jbrowse2/README.html)