recipe jcast

Jcast retrieves splice junction information and translates into amino acids

Homepage:

https://github.com/ed-lau/jcast

License:

MIT / MIT

Recipe:

/jcast/meta.yaml

package jcast

versions:

0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.2.9-0,  0.2.8-0,  0.2.7-0

depends biopython:

>=1.78

depends gtfparse:

>=1.2.1

depends matplotlib-base:

>=3.4.2

depends pandas:

>=1.3.0

depends pomegranate:

>=0.13

depends python:

>=3.7

depends requests:

>=2.24.0

depends scikit-learn:

>=0.24.2

depends tqdm:

>=4.61.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jcast

and update with::

   mamba update jcast

To create a new environment, run:

mamba create --name myenvname jcast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jcast:<tag>

(see `jcast/tags`_ for valid values for ``<tag>``)

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