recipe jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

Homepage:

http://github.com/tanghaibao/jcvi

License:

BSD / BSD-2-Clause

Recipe:

/jcvi/meta.yaml

JCVI utility libraries

package jcvi

Versions:

1.3.5-1,  1.3.4-1,  1.3.4-0,  1.2.7-3,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.4-0, 

1.3.5-1,  1.3.4-1,  1.3.4-0,  1.2.7-3,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.3-0,  1.1.19-1,  1.1.19-0,  1.1.18-0,  1.1.17-2,  1.1.17-1,  1.1.17-0,  1.1.16-0,  1.1.15-0,  1.1.14-0,  1.1.12-0,  1.1.11-1,  1.1.11-0,  1.1.10-1,  1.1.10-0,  1.1.8-0,  1.1.5-0,  1.0.14-0,  1.0.13-0,  1.0.12-0,  1.0.11-0,  1.0.10-0,  1.0.9-1,  1.0.9-0,  1.0.8-1,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  0.9.14-0,  0.9.13-0,  0.9.12-0,  0.9.11-0,  0.9.10-0,  0.9.9-0,  0.9.6-0,  0.8.12-1,  0.8.12-0,  0.8.4-1,  0.8.4-0

Depends:

• biopython

• boto3

• brewer2mpl

• coveralls

• deap

• ete3

• gffutils

• goatools

• graphviz

• jinja2

• last

• libgcc-ng >=12

• matplotlib-base

• more-itertools

• natsort

• networkx

• numpy >=1.21.6,<2.0a0

• pypdf2

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• pyyaml

• r-ggplot2

• r-tinytex

• rich

• scipy

• seaborn-base

• ucsc-liftover

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install jcvi

and update with:

conda update jcvi

or use the docker container:

docker pull quay.io/biocontainers/jcvi:<tag>

(see jcvi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jcvi/README.html)