je-suite¶
Je is a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs
| Home | https://gbcs.embl.de/Je |
| Versions | 1.2, 2.0.RC |
| License | MIT License |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/je-suite |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install je-suite
and update with:
conda update je-suite
Notes¶
Je is Java program that comes with a wrapper shell script. By default “-Xmx4G -Xms256m” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “je -Xms512m -Xmx1g”
A Docker container is available at https://quay.io/repository/biocontainers/je-suite.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/je-suite/README.html)
