- recipe je-suite
Je is a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs
- Homepage:
- License:
MIT / MIT License
- Recipe:
- package je-suite¶
-
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install je-suite
and update with:
conda update je-suite
or use the docker container:
docker pull quay.io/biocontainers/je-suite:<tag>
(see je-suite/tags for valid values for
<tag>
)
Notes¶
Je is Java program that comes with a wrapper shell script. By default "-Xmx4G -Xms256m" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with "je -Xms512m -Xmx1g"
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/je-suite/README.html)