recipe jupiterplot

Circos Assembly Consistency (Jupiter) plot

Homepage:

https://github.com/JustinChu/JupiterPlot

Documentation:

https://github.com/JustinChu/JupiterPlot/blob/1.1/README.md

License:

GPL3 / GPL-3.0-or-later

Recipe:

/jupiterplot/meta.yaml

Links:

doi: 10.5281/zenodo.1241235

package jupiterplot

(downloads) docker_jupiterplot

versions:

1.1-0

depends circos:

depends circos-tools:

depends make:

depends minimap2:

depends perl:

depends perl-gd:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install jupiterplot

and update with::

   mamba update jupiterplot

To create a new environment, run:

mamba create --name myenvname jupiterplot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/jupiterplot:<tag>

(see `jupiterplot/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/jupiterplot/README.html)