recipe k-slam

k-SLAM is a program for alignment based metagenomic analysis of large sets of high-throughput sequence data.

Homepage:

https://github.com/aindj/k-SLAM

License:

GPL-3.0

Recipe:

/k-slam/meta.yaml

package k-slam

(downloads) docker_k-slam

versions:

1.0-1

depends boost:

1.64*

depends libgcc:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install k-slam

and update with::

   mamba update k-slam

To create a new environment, run:

mamba create --name myenvname k-slam

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/k-slam:<tag>

(see `k-slam/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/k-slam/README.html)