recipe kgwasflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Homepage:

https://github.com/akcorut/kGWASflow

Documentation:

https://github.com/akcorut/kGWASflow/blob/master/README.md

License:

MIT / MIT

Recipe:

/kgwasflow/meta.yaml

Links:

doi: 10.5281/zenodo.7860705

package kgwasflow

(downloads) docker_kgwasflow

versions:

1.3.0-0,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-0

depends click:

depends mamba:

depends numpy:

1.23.5.*

depends pandas:

1.5.3.*

depends python:

>=3.10.10

depends snakemake-minimal:

7.25.0.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kgwasflow

and update with::

   mamba update kgwasflow

To create a new environment, run:

mamba create --name myenvname kgwasflow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kgwasflow:<tag>

(see `kgwasflow/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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