recipe kin

A tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.

Homepage:

https://github.com/DivyaratanPopli/Kinship_Inference

Documentation:

https://github.com/DivyaratanPopli/Kinship_Inference/blob/main/README.md

License:

GPL3 / GPL-3.0-only

Recipe:

/kin/meta.yaml

package kin

(downloads) docker_kin

versions:

3.1.4-0

depends bcftools:

>=1.15

depends numba:

>=0.55.1

depends numpy:

>=1.21.1

depends pandas:

>=1.3.1

depends pybedtools:

>=0.9.0

depends pysam:

>=0.19.0

depends python:

3.8.*

depends samtools:

>=1.15

depends scipy:

>=1.8.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kin

and update with::

   mamba update kin

To create a new environment, run:

mamba create --name myenvname kin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kin:<tag>

(see `kin/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kin/README.html)