recipe kipoi_veff

kipoi_veff: variant effect prediction plugin for Kipoi

Homepage:

https://github.com/kipoi/kipoi-veff

Documentation:

https://kipoi.org/veff-docs/

License:

MIT / MIT license

Recipe:

/kipoi_veff/meta.yaml

kipoi_veff: variant effect prediction plugin for Kipoi

package kipoi_veff

Versions:

0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.2-0

Depends:

• colorlog

• cookiecutter

• cyvcf2

• deepdish

• descartes

• future

• h5py

• intervaltree

• kipoi >=0.5.5

• kipoi-utils

• matplotlib

• numpy

• pandas

• pybedtools

• pysam

• python

• pyvcf

• seaborn

• shapely

• tqdm

• urllib3 >=1.21.1,<1.23

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kipoi_veff

and update with:

conda update kipoi_veff

or use the docker container:

docker pull quay.io/biocontainers/kipoi_veff:<tag>

(see kipoi_veff/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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