recipe kipoi_veff

kipoi_veff: variant effect prediction plugin for Kipoi




MIT / MIT license



kipoi_veff: variant effect prediction plugin for Kipoi

package kipoi_veff

(downloads) docker_kipoi_veff



depends colorlog:

depends cookiecutter:

depends cyvcf2:

depends deepdish:

depends descartes:

depends future:

depends h5py:

depends intervaltree:

depends kipoi:


depends kipoi-utils:

depends matplotlib:

depends numpy:

depends pandas:

depends pybedtools:

depends pysam:

depends python:

depends pyvcf:

depends seaborn:

depends shapely:

depends tqdm:

depends urllib3:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kipoi_veff

and update with::

   mamba update kipoi_veff

To create a new environment, run:

mamba create --name myenvname kipoi_veff

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `kipoi_veff/tags`_ for valid values for ``<tag>``)

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