recipe kipoiseq

kipoiseq: sequence-based data-laoders for Kipoi

Homepage:

https://github.com/kipoi/kipoiseq

Documentation:

https://kipoi.org/kipoiseq/

License:

MIT / MIT

Recipe:

/kipoiseq/meta.yaml

kipoiseq: sequence-based data-laoders for Kipoi

package kipoiseq

versions:

0.7.1-0,  0.7.0-0,  0.6.0-0,  0.5.2-0,  0.4.1-0,  0.3.4-1,  0.3.4-0,  0.3.3-0,  0.3.2-0, 

0.7.1-0,  0.7.0-0,  0.6.0-0,  0.5.2-0,  0.4.1-0,  0.3.4-1,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-1,  0.3.0-0,  0.2.7-1,  0.2.7-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.2-0

depends gffutils:

depends kipoi:

>=0.5.5

depends kipoi-conda:

>=0.1.0

depends kipoi-utils:

>=0.1.1

depends numpy:

depends pandas:

depends pyfaidx:

depends pyranges:

depends python:

>=3.6

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kipoiseq

and update with::

   mamba update kipoiseq

To create a new environment, run:

mamba create --name myenvname kipoiseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kipoiseq:<tag>

(see `kipoiseq/tags`_ for valid values for ``<tag>``)

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