recipe kissplice

A local transcriptome assembler for SNPs, indels and AS events

Homepage:

http://kissplice.prabi.fr

License:

CeCILL license

Recipe:

/kissplice/meta.yaml

package kissplice

versions:

2.6.5-0,  2.6.2-0,  2.5.5-2,  2.5.5-1,  2.5.5-0,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0, 

2.6.5-0,  2.6.2-0,  2.5.5-2,  2.5.5-1,  2.5.5-0,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.4.0p1-3,  2.4.0p1-2,  2.4.0p1-1,  2.4.0p1-0

depends _openmp_mutex:

>=4.5

depends bcalm:

>=2.2.3

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends python:

>=3.8

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kissplice

and update with::

   mamba update kissplice

To create a new environment, run:

mamba create --name myenvname kissplice

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kissplice:<tag>

(see `kissplice/tags`_ for valid values for ``<tag>``)

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