recipe kma

KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.

Homepage:

https://bitbucket.org/genomicepidemiology/kma

License:

Apache-2.0

Recipe:

/kma/meta.yaml

Links:

doi: 10.1186/s12859-018-2336-6

package kma

(downloads) docker_kma

Versions:
1.4.3-11.4.3-01.4.2-01.4.1-01.4.0-11.4.0-01.3.28-11.3.28-01.3.27-0

1.4.3-11.4.3-01.4.2-01.4.1-01.4.0-11.4.0-01.3.28-11.3.28-01.3.27-01.3.26-01.3.25-01.3.24-01.3.23-01.3.22-01.3.21-01.3.19-01.3.18-01.3.17-01.3.15-01.3.14-01.3.13-11.3.13-01.3.12-01.3.10-01.3.9-01.3.8-01.3.7-01.3.6-01.3.5-01.3.4-01.3.3-01.3.2-01.3.0-01.2.26-01.2.25-01.2.22-01.2.21-01.2.20-01.2.19-01.2.18-01.2.17-01.2.16-01.2.15-01.2.14-01.2.12-01.2.11-01.2.9-01.2.7-01.2.6-01.2.5-01.2.3-01.2.1-01.2.0-01.1.7-01.0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install kma

and update with:

conda update kma

or use the docker container:

docker pull quay.io/biocontainers/kma:<tag>

(see kma/tags for valid values for <tag>)

Download stats