recipe kma

KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.

Homepage

https://bitbucket.org/genomicepidemiology/kma

License

Apache-2.0

Recipe

/kma/meta.yaml

Links

doi: 10.1186/s12859-018-2336-6

package kma

(downloads) docker_kma

Versions
1.3.4-01.3.3-01.3.2-01.3.0-01.2.26-01.2.25-01.2.22-01.2.21-01.2.20-0

1.3.4-01.3.3-01.3.2-01.3.0-01.2.26-01.2.25-01.2.22-01.2.21-01.2.20-01.2.19-01.2.18-01.2.17-01.2.16-01.2.15-01.2.14-01.2.12-01.2.11-01.2.9-01.2.7-01.2.6-01.2.5-01.2.3-01.2.1-01.2.0-01.1.7-01.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install kma

and update with:

conda update kma

or use the docker container:

docker pull quay.io/biocontainers/kma:<tag>

(see kma/tags for valid values for <tag>)