recipe kmasker

A tool for masking and exploring of sequences from plant species.

Homepage:

https://kmasker.ipk-gatersleben.de/

Developer docs:

https://github.com/tschmutzer/kmasker

License:

GPL3

Recipe:

/kmasker/meta.yaml

Links:

biotools: kmasker

package kmasker

versions:

1.1.1-6,  1.1.1-5,  1.1.1-4,  1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1.0-0

depends blast:

depends coreutils:

>=8.15

depends ea-utils:

depends gffread:

depends jellyfish:

2.2.10.*

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends numpy:

>=1.24.3,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends r-base:

>=4.2,<4.3.0a0

depends which:

>=2.21

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kmasker

and update with::

   mamba update kmasker

To create a new environment, run:

mamba create --name myenvname kmasker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kmasker:<tag>

(see `kmasker/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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