recipe kmertools

kmertools: DNA Vectorisation Tool

Homepage:

https://github.com/anuradhawick/kmertools

Documentation:

https://github.com/anuradhawick/kmertools/wiki

License:

GPL3 / GPL-3.0-only

Recipe:

/kmertools/meta.yaml

kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics.

package kmertools

(downloads) docker_kmertools

versions:

0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-1,  0.1.2-0,  0.1.0-0

depends python_abi:

3.12.* *_cp312

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kmertools

and update with::

   mamba update kmertools

To create a new environment, run:

mamba create --name myenvname kmertools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kmertools:<tag>

(see `kmertools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/kmertools/README.html)