- recipe knock-knock
toolkit for analyzing CRISPR knock-in experiments
- Homepage:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- package knock-knock¶
- versions:
0.4.2-0,0.2.1-0- depends biopython:
>=1.80- depends blast:
>=2.7.1- depends bokeh:
>=2.4.2- depends h5py:
>=3.1.0- depends hits:
>=0.4.0- depends ipywidgets:
>=7.1.2- depends matplotlib-base:
>=2.1.2- depends minimap2:
2.16- depends nbconvert:
>=6.0.7- depends nbformat:
>=4.4.0- depends numpy:
>=1.14.2- depends pandas:
>=0.22.0- depends parallel:
>=20190522- depends pillow:
>=5.0.0- depends pysam:
>=0.14- depends python:
>=3.7- depends pyyaml:
>=3.12- depends samtools:
>=1.9- depends star:
>=2.7.1- depends tqdm:
>=4.31.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install knock-knock and update with:: mamba update knock-knock
To create a new environment, run:
mamba create --name myenvname knock-knock
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/knock-knock:<tag> (see `knock-knock/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/knock-knock/README.html)
