recipe knock-knock

toolkit for analyzing CRISPR knock-in experiments

Homepage

https://github.com/jeffhussmann/knock-knock

License

GPL-3

Recipe

/knock-knock/meta.yaml

package knock-knock

Versions

0.2.1-0

Depends

• biopython >=1.70

• blast 2.7.1

• bokeh >=0.12.14

• hits >=0.1

• ipywidgets >=7.1.2

• matplotlib >=2.1.2

• minimap2 2.16

• nbconvert >=5.3.1

• nbformat >=4.4.0

• numpy >=1.14.2

• pandas >=0.22.0

• parallel >=20190522

• pillow >=5.0.0

• pysam >=0.14

• python >=3.6

• pyyaml >=3.12

• samtools >=1.9

• star >=2.7.1

• tqdm >=4.31.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install knock-knock

and update with:

conda update knock-knock

or use the docker container:

docker pull quay.io/biocontainers/knock-knock:<tag>

(see knock-knock/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/knock-knock/README.html)