recipe kobas

KEGG Orthology Based Annotation System

Homepage:

http://kobas.cbi.pku.edu.cn

License:

Biopython License Agreement

Recipe:

/kobas/meta.yaml

Links:

biotools: kobas

package kobas

versions:

3.0.3-3,  3.0.3-2,  3.0.3-1,  3.0.3-0,  2.1.1-2,  2.1.1-1,  2.1.1-0

depends bioconductor-qvalue:

depends biopython:

depends blast:

depends numpy:

depends pandas:

depends python:

<3

depends r-base:

depends rpy2:

>=2.8.5

depends sqlite:

>=3.30.1,<4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kobas

and update with::

   mamba update kobas

To create a new environment, run:

mamba create --name myenvname kobas

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kobas:<tag>

(see `kobas/tags`_ for valid values for ``<tag>``)

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